PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.CW391
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 362aa    MW: 40680.1 Da    PI: 7.195
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.CW391genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-07213234223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C++Cgk F+r  nL+ H+r H
  Aradu.CW391 213 FCQICGKGFKREANLRMHMRAH 234
                  6*******************99 PP

2zf-C2H210.90.0014299322123
                  EEETTTT.EEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                  y+C+ C+ k Fs  s+L++H + +
  Aradu.CW391 299 YVCKRCNnKNFSLLSDLRTHEKHC 322
                  9*******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.88E-6211268No hitNo description
SMARTSM003554.7E-4212234IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.3212239IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-7214265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
SMARTSM0035539261294IPR015880Zinc finger, C2H2-like
SMARTSM0035534299321IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAAASSDEGG GGFPPMTQYS SSSSSSSSSS STMYHYLSVL NDKINELQSL VGVIASPNRH  60
HSSIPCSSYS MAISTMTSTI QDIILASSSF RLTFQQHINS YNNPSSSGTI IAPSCNNQQL  120
ELHPHHHHQS YDYNNSNIIR GGTSSVANHE PAQEEDEEDE ETLHWFSEPY NNNNSTVIYC  180
DDDNNNTKDE DGEEETDIIE LDAADLLASY THFCQICGKG FKREANLRMH MRAHGDEFKT  240
SEALKNNKNN KKMMITKKKK YSCPEDGCRW NKNHAKFQAL KSMVCVKNHY KRSHCPKMYV  300
CKRCNNKNFS LLSDLRTHEK HCGDPNKWLC SCGTTFSRKD KLFGHLALFL GHSPVHAATQ  360
RS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015951806.10.0PREDICTED: zinc finger protein STOP1 homolog
TrEMBLV7BYJ41e-116V7BYJ4_PHAVU; Uncharacterized protein
STRINGGLYMA12G08680.21e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.15e-82C2H2 family protein